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  • Biology-Online • View topic - Classification of non-coding RNA
    wish to share RNAcon a web server for the prediction and classification of non coding RNAs It uses SVM based model for the discrimination between coding and ncRNAs and RandomForest based prediction model for the classification of ncRNAs into different classes The structural information based graph properties were used for the development of prediction model See http www biomedcentral com 1471 2164 15 127 http crdd osdd net raghava rnacon

    Original URL path: http://www.biology-online.org/biology-forum/about37454.html (2016-02-17)
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  • Biology-Online • View topic - How to predicate miRNA target in non-model animals
    predicate miRNA target from a non model fish species I have sequenced small RNA and mRNA and then proceed to do the de novo assembly to get the transcriptome There is no genome sequence available for this fish Any idea about how to predicate the miRNA target without genome sequence and degradome Thank you so much Reply with quote JackBean JackBean Posts 5694 Joined Mon Sep 14 2009 7 12

    Original URL path: http://www.biology-online.org/biology-forum/about34706.html (2016-02-17)
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  • Biology-Online • View topic - peptidyl transferase center?!
    peptide formation reaction It is located in 60s subunit of ribosome EC 2 3 2 12 there are some pdb IDs like 3j3b n 3j3f but not for the pure protein I actually need a pdb file of ptc for my docking issue how can I find it Reply with quote JackBean JackBean Posts 5694 Joined Mon Sep 14 2009 7 12 pm Mon Nov 11 2013 2 18 pm

    Original URL path: http://www.biology-online.org/biology-forum/about34821.html (2016-02-17)
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  • Biology-Online • View topic - Multiple alignment tools
    about 20000 The only way I know to do it is to download FASTA reformat in notepad or word then use CLUSTALW However this would be a very lenghtly procedure Are there any online free preferably or other alignment tools that would do the job with accession numbers ony Any advise is much appreciated Reply with quote GaryGaulin GaryGaulin Posts 66 Joined Fri Feb 27 2009 1 52 am Location Massachusetts Website Fri Oct 26 2012 2 49 am I did not try it yet but UCSC Genome Bioinformatics has a Custom Tracks feature that would seem to be able to align what you need by accession number http genome preview ucsc edu cgi bin id 2650221 Does that work for you Reply with quote JackBean JackBean Posts 5694 Joined Mon Sep 14 2009 7 12 pm Sun Nov 04 2012 10 11 am Why do you need to reformat it Why do you want to use AC Reply with quote jungleman67 jungleman67 Posts 2 Joined Mon Oct 28 2013 2 55 pm Tue Oct 29 2013 1 42 am Saeed Fahad made P Pyro Align which was made for that I think http www ncbi nlm nih gov pubmed

    Original URL path: http://www.biology-online.org/biology-forum/about26724.html (2016-02-17)
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  • Biology-Online • View topic - What exactly should I do regarding grad school?
    96 and haven t gotten a job I m thinking of applying to grad school but a lot of them have a 3 0 gpa requirement I haven t taken the GRE yet How should I get into grad school And also what should I master in I don t know what employment is like for bio masters Should I get a masters in bioinformatics Molecular Biology A related field

    Original URL path: http://www.biology-online.org/biology-forum/about34762.html (2016-02-17)
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  • Biology-Online • View topic - In silico Platform for Bioinformatics
    Dec 06 2008 8 38 pm In silico Platform for Bioinformatics Sun Oct 13 2013 4 22 pm Dear Colleages We are please to announce OSDDlinux Operating System for Drug Discovery which integrate large number of bioinformatics software We need your feedbak suggestion and comment on this OS http osddlinux osdd net Post a reply Jump to Select a forum General Biology General Discussion Cell Biology Molecular Biology Zoology Discussion

    Original URL path: http://www.biology-online.org/biology-forum/about34639.html (2016-02-17)
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  • Biology-Online • View topic - Aligning RNA to genomic DNA
    far it I can only align either exon 1 or 2 but not both because there is a huge intronic gap in the gDNA I tried reducing the gap open penalty to about 2 and increase extension to 20 but still does not work I used several programs already including clustal and genieous but so far no go Thanks in advance Alex Reply with quote JackBean JackBean Posts 5694 Joined

    Original URL path: http://www.biology-online.org/biology-forum/about34497.html (2016-02-17)
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  • Biology-Online • View topic - Methods of plant identification
    identification Please i need your suggestions on this Reply with quote wbla3335 wbla3335 Posts 227 Joined Thu Aug 17 2006 7 20 am Re Methods of plant identification Thu Sep 05 2013 4 13 am I can t help with the programming but for ideas on how to design your key s you can look at the many online or print keys available Reply with quote JackBean JackBean Posts 5694 Joined Mon Sep 14 2009 7 12 pm Thu Sep 05 2013 11 31 am do you want to make it text or picture based Reply with quote valentfm valentfm Posts 3 Joined Sun Aug 26 2012 7 00 pm Sun Sep 08 2013 10 50 pm Both text and pictures including plants anatomy and features Identification will also based on geographical location of species We are going to have botanist and researchers all over the continent and also good reference As for the programming you can leave that to our team all i just need is your support and contributions Thanks Reply with quote JackBean JackBean Posts 5694 Joined Mon Sep 14 2009 7 12 pm Tue Sep 10 2013 3 06 pm what kind of support and contribution

    Original URL path: http://www.biology-online.org/biology-forum/about33868.html (2016-02-17)
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