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  • Matlab Index
    spectral analysis hybrid chronux spectral analysis plots chronux spectral analysis pointbinned chronux spectral analysis pointtimes chronux spectral analysis specscope chronux spectral analysis statistical tests chronux test chronux wave browser Matlab Files found in these Directories CalcCurvature dpsschk getnext pca1 CalcReorientAngle evoked getnext plot matrix CleanData extractdatac getparams plot vector CrossSpecMat extractdatapb hatmatrix plotbyfactor CrossSpecMatc extractdatapt invlink plotsig CrossSpecMatpb feature calc script isi plotsigdiff CrossSpecMatpt fig10 1 jackknife plx ad FAnalyze fig11 1 kappa0 plx event ts FTrack fig11 4 lcv plx info FindDuration fig11 5 lcvplot plx ts FindFly fig13 1 lf censor plx waves FlyOrient fig1 1 lfband predict FlyTracker fig1 2 lfex1 psth JointDist fig2 2 lfex2 quadcof ProbDist1D fig2 3 lfgui quadinv ProbDist2D fig2 4 lfknots readdat acoustic features MB fig2 5 lfmarg residuals addframe fig2 6 lfplot rmlinesc addframe fig2 7 lfsmooth rmlinesmovingwinc addframe fig3 1 load scope rsum aic fig4 1 locdetrend rtf aicplot fig4 2 locfit runbook auto classify fig4 3 locfit all runline backtr fig4 4 locsmooth runline binspikes fig5 1 minmaxsptimes scb change row to column fig5 2 mtdspecgramc seek check consistency fig5 3 mtdspecgrampb seek chronux fig5 4 mtdspecgrampt seek classify spectra fig5 5 mtdspectrumc segment calc script close fig5 6 mtdspectrumpb significant spike field coherenceMBL2005 close fig6 1 mtdspectrumpt smooth lf close fig6 2 mtfftc specerr close fig6 3 mtfftpb specscope close fig6 4 mtfftpt specscopepp close fig6 5 mtpowerandfstatc spectraMBL2005 coherencyc fig6 6 mtspecgramc spence15 coherencyc unequal length trials fig6 7 mtspecgramc fast spence21 coherencycpb fig7 1 mtspecgramc slow spike field coherenceMBL2005 coherencycpt fig7 2 mtspecgrampb spsvd coherencypb fig7 3 mtspecgrampt sta coherencypt fig7 4 mtspecgramtrigc staogram coherencysegc fig7 5 mtspecgramtrigpb start display coherencysegcpb fig7 6 mtspecgramtrigpt step coherencysegcpt fig8 1 mtspectrum of spectrumc step coherencysegpb fig8 2 mtspectrumc step coherencysegpt fig8 3 mtspectrumc unequal length trials testAvg3 coherr

    Original URL path: http://www.chronux.org/Documentation/index.html (2015-03-27)
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  • all previous releases of Chronux The home page contains links to pages for downloads people recent news tutorials various files documentation and our discussion forum There are also Google groups for Chronux discussion and Chronux announcements which you can join As an open source project released under the GNU Public License GPL v2 we welcome development code contributions bug reports and discussion from the community B Requirements Chronux has been tested and runs under Matlab releases R13 to R2008a under the Windows Macintosh and Linux operating systems Besides Matlab itself Chronux requires the Matlab Signal Processing Toolbox for proper operation The specscope utility depends upon the Matlab Data Acquisition Toolbox as well Most of the code is written in the Matlab scripting language with some exceptions as compiled C code integrated using Matlab mex functions The Locfit subpackage utilizes Matlab mex functions which are pre compiled and included for the Windows and Linux platform For the Mac platform recompilation of the locfit subpackage is currently necessary C Installation Setup The code is available as a smaller zip file without data for testing and a larger zip file that contains testing data The code documentation may be downloaded from http chronux org To install Chronux first unzip the zip archive into any location on your computer Then the Matlab path must be set to include the Chronux directory and all subdirectories recursively contained within All Chronux functions and help information are then available from the Matlab command line D Upgrading The Matlab paths to previous Chronux versions should removed To use the newer version of Chronux follow the instructions in section C E Changes in this release Various bugs have been fixed in this release The following routines have been modified since the version 2 00 release findpeaks coherr mtspecgramc coherencyc

    Original URL path: http://www.chronux.org/chronux/images/chronux_data/chronux_2_10_release_note.txt (2015-03-27)
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  • Tutorials
    the chronux distribution and were created for the 2006 SFN dynamical neuroscience workshop The Matlab scripts are meant to be run while viewing the presentations You must first install chronux to use most of the tutorials Chronux Manual The Chronux Manual describes how to use Chronux Documentation M2HTML generated documentation can be found here Tutorials by Author Name Partha Mitra Talk PDF Bijan Pesaran Talk Powerpoint Hemant Bokil Whole tutorial

    Original URL path: http://www.chronux.org/tutorials (2015-03-27)
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  • Password Reset
    the latest build by clicking on the image below You can also access the online documentation by clicking here Message Please login first Please login first Please enter the email address for your account A verification code will be sent to you Once you have received the verification code you will be able to choose a new password for your account Email Address Submit Additional information Login Register Username Password

    Original URL path: http://www.chronux.org/index.php/using-joomla/extensions/components/users-component/password-reset (2015-03-27)
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  • Username Reminder Request
    can send us an email by clicking here Get Chronux Download the latest build by clicking on the image below You can also access the online documentation by clicking here Please enter the email address associated with your User account Your username will be emailed to the email address on file Email Address Submit Additional information Login Register Username Password Remember Me Forgot your password Forgot your username Name Username

    Original URL path: http://www.chronux.org/index.php/using-joomla/extensions/components/users-component/username-reminder (2015-03-27)
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  • Site Name
    Search Search Contact Us Questions You can send us an email by clicking here Administrator Components Media Manager Extensions Manager Menu Manager Global Configuration Banners Redirect All Pages Page 1 of 7 All components are also used in the administrator area of your website In addition to the ones listed here there are components in the administrator that do not have direct front end displays but do help shape your

    Original URL path: http://www.chronux.org/index.php?option=com_content&view=article&id=1 (2015-03-27)
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  • Home
    an open source software package for the analysis of neural data It was originally developed through a collaborative research effort based at the Mitra Lab in Cold Spring Harbor Laboratory Chronux routines may be employed in the analysis of both point process and continuous data ranging from preprocessing exploratory and confirmatory analysis The current release of Chronux is implemented as a MATLAB library The release notes can be found here There is a test data suit for this release which can be downloaded by clicking here Chronux tutorials The Chronux tutorials can help you to get started using Chronux Chronux discussion Please use our discussion forum to suggest new Chronux features for general discussion of the Chronux software package or to have any questions about Chronux answered by the developers There are also a google group for chronux announcements which you can join You can also subscribe to the newsletter for periodic updates Chronux bugs Please report bugs using our discussion forum Citing Chronux When using Chronux in a paper please cite the Chronux website http chronux org and the book Observed Brain Dynamics Partha Mitra and Hemant Bokil Oxford University Press New York 2008 The Chronux MATLAB package was

    Original URL path: http://www.chronux.org/index.php (2015-03-27)
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  • Site Name
    Search Search Contact Us Questions You can send us an email by clicking here Administrator Components Media Manager Extensions Manager Menu Manager Global Configuration Banners Redirect All Pages Page 1 of 7 All components are also used in the administrator area of your website In addition to the ones listed here there are components in the administrator that do not have direct front end displays but do help shape your

    Original URL path: http://www.chronux.org/index.php/index.php?option=com_content&view=article&id=1 (2015-03-27)
    Open archived version from archive



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