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  • Application of NGS to examine genetic diversity of piroplasmids in their definitive host - metabarcoding.org
    the inter and intraspecific genetic diversity of piroplasmids in ticks the Next Generation Sequencing NGS technique represents the method of choice The aim of the future project at our lab is to examine the ticks collected from several domesticated animal from several localities in northern Kenya for the diversity of piroplasmids The plan is to use different genetic markers for the aforementioned purpose namely the 18s Ribosomal Small Subunit Cytochrome C Oxidase subunit II and the Internal Transcribed Spacer ITS1 and ITS 2 either separately or collectively Subsequently the generated sequence data will be used for phylogenetic analysis The outcomes of the project are expected to contribute to a better understanding of the actual level of genetic diversity of piroplasmids in the ticks Additionally it may also explain the low host specificity of piroplasmids that has been highlighted by several reports during the past few years Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During

    Original URL path: http://metabarcoding.org/spip.php?article46 (2016-04-26)
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  • The use of DNA metabarcoding to optimize the natural history collections of two Belgian federal institutes - metabarcoding.org
    highly various and include amongst others insects fruit flies termites and other invertebrates flatworms spiders as well as vertebrates freshwater fish birds The geographic areas under focus are Antarctica and central Africa Given the harsh conditions to perform field work in these areas obtaining representative samples of the local biodiversity is often difficult Hence with the recent advent of DNA metabarcoding JEMU is aiming at introducing the technique in both federal institutes I will illustrate how DNA metabarcoding may provide invaluable information for the ongoing taxonomic work at the RBINS and RMCA and how such data can be used to validate the natural history collections at both museums Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the week experienced metabarcoders gave lectures on their trials and tribulations in the field of metabarcoding sparking conversations between the attendees The end of the first day saw flash talks from all participants of the event creating an

    Original URL path: http://metabarcoding.org/spip.php?article45 (2016-04-26)
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  • High throughput species identification of insects as ecological indicators using next generation sequencing - metabarcoding.org
    DNA barcoding campaign for Lepidoptera gathering today more than 700K DNA barcodes for ca 73 5K species I will briefly introduce the ongoing efforts to assemble local regional and global reference libraries for this insect order I will then present the example of an ecological study in Amazonia where we tested the applicability and potential of high throughput molecular identification using next generation sequencing in two moderately diverse families of moths Saturniidae and Sphingidae for which a comprehensive reference library is available Finally I will introduce a new project in which we aim at using a similar approach with saproxylic beetles These insects are classical forest indicators and represent in Europe only an assemblage of several thousands of species in dozens of different families Metabarcoding stands here as a promising option to handle the identification of the overwhelming number of specimens collected during sampling campaigns Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the

    Original URL path: http://metabarcoding.org/spip.php?article44 (2016-04-26)
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  • What’s In the Mix? Piles of Pills and Bags of Bones - metabarcoding.org
    environmental investigations on ancient animal middens and cave sediments This presentation will describe two studies The first is an investigation into the biological and pharmacological constituents of Traditional Chinese Medicines which reveals some surprise and disconcerting ingredients The second is a novel technique to rapidly access the biodiversity of large numbers of morphologically uninformative bone fragments I will also mention how our laboratory deals with issues of potential contamination and how we are attempting to bioinformatically process the large volumes of data that the next generation sequencing machines output Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the week experienced metabarcoders gave lectures on their trials and tribulations in the field of metabarcoding sparking conversations between the attendees The end of the first day saw flash talks from all participants of the event creating an icebreaker and showing the wide variety of applications for metabarcoding including dietary studies environmental health fundamental ecology and exploration

    Original URL path: http://metabarcoding.org/spip.php?article43 (2016-04-26)
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  • metabarcoding.org
    cost alternative based on cataloging the diversity and abundance of benthic communities through metabarcoding of environmental DNA eDNA To be considered for this position please send your CV and brief email text explaining your suitability to Read more of Developing metabarcoding tools for environmental DNA based biomonitoring in aquatic ecosystems Latest articles Investigating fish abundance through quantification of aqueous environmental DNA 3 March 2012 by TURNER Cameron Water bodies are a rich source of suspended environmental DNA eDNA and recent work has Read more of Investigating fish abundance through quantification of aqueous environmental DNA Designing new metabarcodes 2 March 2012 by Eric Coissac Environmental DNA metabarcoding is at the same time similar and different with the classical Read more of Designing new metabarcodes Cryptic lineages or cryptic species in european barcoded bats Chiroptera 2 March 2012 by RUEDI Manuel Many barcode surveys of animal and plant groups result in the identification of distinct Read more of Cryptic lineages or cryptic species in european barcoded bats Chiroptera Is orchid distribution limited by their mycorrhizal associations 2 March 2012 by TĚŠITELOVÁ Tamara Orchids are obligately dependent on symbiosis with mycorrhizal fungi mainly basidiomycetes Read more of Is orchid distribution limited by their mycorrhizal associations Exploring the Role of Land snails in Ecosystems 2 March 2012 by PAUSTIAN Megan Genetic approaches are key to expanding the scope of land snail ecology and establishing their Read more of Exploring the Role of Land snails in Ecosystems 0 20 25 30 35 40 45 50 55 60 65 Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine

    Original URL path: http://metabarcoding.org/?debut_articles=45 (2016-04-26)
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  • metabarcoding.org
    bg br brezhoneg bs bosanski ca català co corsu cpf Kréol réyoné cpf hat Kréyòl Péyi Dayiti cs čeština da dansk de Deutsch en English eo Esperanto es Español eu euskara fa fon fongbè fr français fr fem français féminin gl galego he hr hrvatski hu magyar id Indonesia it italiano it fem italiana ja km lb Lëtzebuergesch my Burmese nl Nederlands oc auv òc auvernhat oc gsc òc gascon oc lms òc lemosin oc lnc òc lengadocian oc ni òc niçard oc ni la òc niçard larg oc ni mis òc nissart mistralenc oc prv òc provençau oc va òc vivaroaupenc pl polski pt Português pt br Português do Brasil ro român ru sk slovenčina sv svenska tr Türkçe vi Ti ng Vi t zh Personal identifiers Login or e mail address Password password forgotten Remember my ID for a few days Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the week experienced

    Original URL path: http://metabarcoding.org/spip.php?page=login&url=.%2F%3Fdebut_articles%3D25 (2016-04-26)
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  • Barcoding and Meta-barcoding Research in the Laboratory of Animal Population Genetics of School of Biology of Aristotle University of Thessaloniki - metabarcoding.org
    biodiversity At the same time we are also in the process of using NGS barcoding for environment monitoring based on metabarcoding analyses of macro invertebrates Benthic macroinvertebrates are considered as good indicators of local scale conditions in rivers constituting the largest database for biomonitoring running waters in Europe Numerous studies have been contacted by the Laboratory of Zoology of our school for the assessment of the ecological quality of running waters using classic systematic identification of these biological elements in order to fulfill all the requirements of the EU Water Framework Directive and provide data on the ecological status of its surface waters The future aim of the lab is to apply NGS and meta barcoding approaches through genetic identification of macro invertabrates for the assessement of the ecological status of surface waters Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the week experienced metabarcoders gave lectures on their trials and tribulations in the

    Original URL path: http://metabarcoding.org/spip.php?article42 (2016-04-26)
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  • Protocol optimization for eDNA metabarcoding of macrofauna indicator species listed in the European Water Framework Directive - metabarcoding.org
    of mammals amphibians fishes and 2 species of large arthropods Metabarcoding of fishes and amphibians from environmental samples has effectively been used to create complete lists of local species diversity The aim of this study is to develop a standardized eDNA detection approach to assess macrofauna bioindicator diversity DNA will be amplified with universal primers and sequenced using the Ion Torrent platform Experiments will be done to optimize the eDNA detection method varying the extraction and sample approach and primers used The optimized protocol will be used in a field experiment in which the effectiveness of the approach will be tested in different habitat types Besides the field experiment a laboratory experiment will be done to examine the effect pH and organic matter content on the detectibility and rate of decay of the water The development of an eDNA based approach for detection of macrofauna will lead to more effective biomonitoring of freshwater systems Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them

    Original URL path: http://metabarcoding.org/spip.php?article41 (2016-04-26)
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