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  • The fifth DNA metabarcoding Spring School at Białowieża - metabarcoding.org
    for the school 24 places by sending an email to the following address bialowieza2015 at metabarcoding org The email must contain a brief curriculum vitae and a letter of motivation indicating how your researches are related to DNA metabarcoding and what you are hoping from this school As part of the course program each participant is required to give a flash talk 5 minutes about its research and how it is related to DNA metabarcoding Registration deadline is 15 April 2015 Main lecturers Marta de Barba LECA CNRS France Aurélie Bonin LECA CNRS France Frédéric Boyer LECA CNRS France Antony Chariton CSIRO Australia Eric Coissac LECA CNRS France Håvard Kauserud University of Oslo Norway Dorota Porazinska University of Colorado USA Pierre Taberlet LECA France Douglas Yu Eastanglia UK Kunming Institute of Zoology China Lucie Zinger EDB CNRS France Course Schedule The school will consist of a series of lectures and practicals introducing different aspects of DNA metabarcoding Bioinformatics practicals will introduce data analysis from raw sequences to basic ecological conclusions Molecular ecology practical will present basic technics for DNA extraction in field condition and DNA amplification by PCR Provisional planning TIme Monday June 1 st Tuesday June 2 nd Wednesday June 3 rd Thursday June 4 th Friday June 5 th 8h00 9h00 Welcome lecture presentation of the Mammal Research Institute PAS Rafal Kowalczyk Environmental monitoring Anthony Chariton Co occurrence and Interaction networks Anthony Chariton 9h00 10h00 DNA metabarcoding introduction Pierre Taberlet Practical Group A Metabarcdong sampling Group B Bioinfo 1 Diet analysis Marta de Barba DNA metabarcoding of nematodes communities Dorota Porazinska Practical Group A Bialowieza forest and its ecosystem Group B Bioinfo 3 10h00 10h30 Coffe Break 10h30 11h30 Metabarcode design Eric Coissac Practical Group A Metabarcdong sampling Group B Bioinfo 1 Biodiversity Patterns Lucie Zinger Lecture 11 Practical Group A Białowieża forest and its ecosystem Group B Bioinfo 3 11h30 12h30 The earth micro biome project Dorota Porazinska Metabarcoding and Mitogenomics Douglas Yu Microbiology DNA metabarcoding Håvard Kauserud 12h30 14h00 Lunch 14h00 17h30 24 x 5 min flash presentation Practical Group A Bioinfo 1 Group B Metabarcodng sampling Practical Group A DNA extraction PCR Group B Bioinfo 2 Practical Group A Bioinfo 2 Group B DNA extraction PCR Practical Group A Bioinfo 3 Group B Białowieża forest and its ecosystem Travel and accomodation To join Białowieża the easiest way is to reach Warsaw airport According to the number of participant we will propose to you the most convenient solution to travel from Warsaw to Białowieża the Sunday 31h of March afternoon Accommodation will be provided in double bedrooms at the guesthouse located in the park close to the place of the school Meals will be served at the same place at the Parkowa restaurant Workshop Costs There are no registration fees for the workshop Participants will have to pay for their accommodation meals and travel expenses The cost for accommodation and meals for 6 days is estimated to 1500 PLN 360 Twitter Metabarcoding Editorial board BRANDNER Melissa

    Original URL path: http://metabarcoding.org/spip.php?article70 (2016-04-26)
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  • Jan M. WOJCIK - metabarcoding.org
    Your email address Required Subject Required Text of your message Required Please leave this field empty Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the week experienced metabarcoders gave lectures on their trials and tribulations in the field of metabarcoding sparking conversations between the attendees The end of the first day saw flash talks

    Original URL path: http://metabarcoding.org/spip.php?auteur87 (2016-04-26)
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  • Rafal KOWALCZYK - metabarcoding.org
    email address Required Subject Required Text of your message Required Please leave this field empty Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the week experienced metabarcoders gave lectures on their trials and tribulations in the field of metabarcoding sparking conversations between the attendees The end of the first day saw flash talks from

    Original URL path: http://metabarcoding.org/spip.php?auteur86 (2016-04-26)
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  • TABERLET Pierre - metabarcoding.org
    DNA The fourth metabarcoding spring school in South Africa Introduction to DNA metabarcoding DNA metabarcoding Send a message Your email address Required Subject Required Text of your message Required Please leave this field empty Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the week experienced metabarcoders gave lectures on their trials and tribulations in

    Original URL path: http://metabarcoding.org/spip.php?auteur2 (2016-04-26)
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  • metabarcoding.org
    an efficient and reliable lower cost alternative based on cataloging the diversity and abundance of benthic communities through metabarcoding of environmental DNA eDNA To be considered for this position please send your CV and brief email text explaining your suitability to Read more of Developing metabarcoding tools for environmental DNA based biomonitoring in aquatic ecosystems Latest articles Two days with DNA metabarcoding Cluj Romania 21 January 2015 by Eric Coissac PUSCAS Mihai TABERLET Pierre DNA metabarcoding is a rapidly evolving method for assessing biodiversity from environmental Read more of Two days with DNA metabarcoding Cluj Romania The fourth metabarcoding spring school in South Africa 28 February 2014 by TABERLET Pierre The fourth metabarcoding spring school is dedicated to DNA based diet analysis Organizer Read more of The fourth metabarcoding spring school in South Africa The third DNA metabarcoding spring school in Tromsø 27 November 2013 by Eric Coissac DNA metabarcoding is a rapidly evolving method for assessing biodiversity from environmental Read more of The third DNA metabarcoding spring school in Tromsø Day 3 Data analysis I 20 May 2013 by BOYER Frédéric Eric Coissac This third practical introduce OBITools and the way to use them for processing raw sequencing Read more of Day 3 Data analysis I Day 2 Primer design 14 May 2013 by BOYER Frédéric Eric Coissac The second practical propose to design primers amplifying a metabarcode marker specific of Read more of Day 2 Primer design 0 5 10 15 20 25 30 35 40 65 Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece

    Original URL path: http://metabarcoding.org/?debut_articles=5 (2016-04-26)
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  • metabarcoding.org
    practicals All the lectures and the practicals will be taught in English The number of participants in the lecture portion is not limited but Read more of The sixth DNA metabarcoding Spring School at Kunming Latest articles Day 1 UNIX introduction 14 May 2013 by BOYER Frédéric Eric Coissac The first session of the practicals is dedicated to UNIX system presentation The basic skills Read more of Day 1 UNIX introduction eDNA monitoring of aquatic animals based on water samples 10 May 2013 University of Copenhagen Natural History Museum of Denmark Aquatic animals are being Read more of eDNA monitoring of aquatic animals based on water samples Comparison of conventional otolith analysis and DNA metabarcoding approach to assess the diet of the Mediterranean Shag from pellets 18 April 2013 1 Hellenic Centre for Marine Research P O Box 2214 GR 71003 Heraklion Greece 2 Read more of Comparison of conventional otolith analysis and DNA metabarcoding approach to assess the diet of the Mediterranean Shag from pellets Impact of metal and spray pollutions on the biodiversity of Astragalus tragacantha associated root symbionts 18 April 2013 Lucie Miché Alex Baumel Pascal Mirleau Laurence Affre Isabelle Laffont Schwob Read more of Impact of metal and spray pollutions on the biodiversity of Astragalus tragacantha associated root symbionts Host preference of fungal communities in a tropical forest evidences obtained with 454 pyrosequencing of fungal ITS 18 April 2013 Heidy Schimann1 Eliane Louisanna1 Claude Murat2 and Marc Buée2 1 INRA Joint Research Unit Read more of Host preference of fungal communities in a tropical forest evidences obtained with 454 pyrosequencing of fungal ITS 0 5 10 15 20 25 30 35 40 65 Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land

    Original URL path: http://metabarcoding.org/?debut_articles=10 (2016-04-26)
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  • metabarcoding.org
    will be taught in English The number of participants in the lecture portion is not limited but Read more of The sixth DNA metabarcoding Spring School at Kunming Latest articles Assessing the diversity and dynamics of microbial communities within the gut 18 April 2013 Istituto di Microbiologia Università Cattolica del Sacro Cuore Piacenza Italy The microbial Read more of Assessing the diversity and dynamics of microbial communities within the gut Gastrointestinal microbiota of wild and inbred individuals in two House Mouse subspecies assessed using high throughput parallel pyrosequencing 18 April 2013 Jakub Kreisinger 1 2 Dagmar Čížková 2 Jaroslav Piálek 2 1 Department of Zoology Faculty of Read more of Gastrointestinal microbiota of wild and inbred individuals in two House Mouse subspecies assessed using high throughput parallel pyrosequencing The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna 18 April 2013 Molecular tools have revolutionized the exploration of biodiversity especially in organisms Read more of The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna Next generation biodiversity Combination of molecular and morphological approaches to estimate biodiversity in lagoonal sediments 18 April 2013 Benthic macrofaunal diversity has been traditionally estimated though means of classical Read more of Next generation biodiversity Combination of molecular and morphological approaches to estimate biodiversity in lagoonal sediments Attempting to characterize marine meiofauna using metabarcoding what we got and what we wish 18 April 2013 Characterizing macro and meiobenthic marine invertebrates has always been a hard and Read more of Attempting to characterize marine meiofauna using metabarcoding what we got and what we wish 0 5 10 15 20 25 30 35 40 65 Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for

    Original URL path: http://metabarcoding.org/?debut_articles=15 (2016-04-26)
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  • metabarcoding.org
    23rd Three days of practicals All the lectures and the practicals will be taught in English The number of participants in the lecture portion is not limited but Read more of The sixth DNA metabarcoding Spring School at Kunming Latest articles Obtaining genetic diatom diversity from arctic lake sediments 18 April 2013 Kathleen R Stoof Leichsenring1 2 Ludmila Pestryakova3 Ulrike Herzschuh1 4 Ralph Read more of Obtaining genetic diatom diversity from arctic lake sediments My way into NGS From doing old things to a complete change in approach 18 April 2013 Natural History Museum of Paris Systematic and Evolution Department USM 2700 UMR 7138 I Read more of My way into NGS From doing old things to a complete change in approach Metabarcoding of plant pollinator networks 18 April 2013 Many plant species depend upon pollination by insects and animal pollination is often proposed Read more of Metabarcoding of plant pollinator networks DNA based biodiversity assessment of beetle assemblages making the transition towards a metabarcoding approach 18 April 2013 My work focuses on the study of biodiversity patterns of beetle assemblages in a range of Read more of DNA based biodiversity assessment of beetle assemblages making the transition towards a metabarcoding approach Molecular identification of the diet for the Pomatoschistus gobies from Mediterranean lagoons towards a better management of the lagoonal ecosystems 18 April 2013 The Mediterranean coast is a very favourable zone for the development and reproduction of plant Read more of Molecular identification of the diet for the Pomatoschistus gobies from Mediterranean lagoons towards a better management of the lagoonal ecosystems 0 5 10 15 20 25 30 35 40 65 Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights

    Original URL path: http://metabarcoding.org/?debut_articles=20 (2016-04-26)
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