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  • The third DNA metabarcoding spring school in Tromsø - metabarcoding.org
    to all researchers involved in DNA metabarcoding projects wishing to present their results The results can be presented as short oral communications of 15 minutes and or as a poster People wishing to present their results must submit a title and short abstract 250 words with their workshop registration and indicate their preference for oral presentation or poster Provisional planning TIme Sunday Monday Tuesday Wednesday Thursday Friday Saturday March 30 th March 31 st April 1 st April 2 nd April 3 rd April 4 th April 5 th 7h30 8h30 Breakfast 8h30 9h00 Welcome lecture Sampling design Nigel Yoccoz Biodiversity Patterns Lucie Zinger Environemental monitoring Anthony Chariton 9h00 10h00 DNA metabarcoding introduction Pierre Taberlet Keynote 1 Douglas Yu Keynote 3 Xin Zhou 10h00 10h30 Primer design Eric Coissac eDNA from sampling to molecular lab Pierre Taberlet Diet analysis Marta de Barba Microbiology DNA metabarcoding Håvard Kauserud Coffee break 10h30 11h30 6 x 15 5 min participant talks 6 x 15 5 min participant talks 11h30 12h00 Lunch 12h00 13h00 Lunch Poster 13h00 14h00 Practical 1 Practical 2 Practical 3 Practical 4 14h00 15h00 Keynote 2 Keynote 4 Anthony Chariton 15h00 15h30 Coffee break 15h30 16h00 Diner 6 x 15 5 min participant talks 5 x 15 5 min participant talks 16h00 17h00 17h00 17h30 Closure 17h30 19h30 Travel to Skibotn Field station 8 x 12 3 min participant talks 8 x 12 3 min participant talks 8 x 12 3 min participant talks Travel to Tromsø Keynote talks Keynote 1 Douglas Yu University of East Anglia UK Kunming Institute of Zoology China Reliable verifiable and efficient monitoring of biodiversity via metabarcoding Keynote 2 Pierre Taberlet LECA France DNA metabarcoding and palaeoenvironments Keynote 3 Xin Zhou BGI China Moving from COI metabarcoding to mitochondrial metabarcoding Keynote 4 Anthony Chariton CSIRO Australia Saltwater inundation in Kakadu Nation Park can ecogenomics assist in the management of sea level rise Travel and accomodation ForBio will cover travel stay at the Skibotn Field Station including 3 meals of typical Norwegian food per day and a late evening snack and accommodation at Sydspissen Hotel in Tromsø for 4 days 1 day before and after the school dates plus 2 days during the workshop for ForBio members ForBio may also support masters students registered at Danish Swedish Norwegian or Finnish universities who fulfill the prerequisites and need the course for their thesis work ForBio will not cover any expenses e g food travel or accommodation costs for other participants who have to be registered as ForBio associates to attend the course and or workshop See http www forbio uio no for more information on ForBio membership For ForBio associates the total cost of stay at the Skibotn Field Station for 4 days is estimated at 2116 NOK 256 including room and food Reimbursement ForBio members and invited participants do not need to reserve or pay for accommodation at the Sydspissen hotel ForBio will reserve rooms for them and pay the bill directly All participants except invited

    Original URL path: http://metabarcoding.org/spip.php?article66 (2016-04-26)
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  • Second Metabarcoding Spring School in Crete (13-17 May 2013) - metabarcoding.org
    however people from all fields of metabarcoding are encouraged to participate Main lecturers Chris Bowler ENS France Antony Chariton CSIRO Australia Eric Coissac LECA CNRS France François Pompanon LECA CNRS France Xin Zhou BGI China Lucie Zinger EDB CNRS France Final program Monday 13 Tuesday 14 Wednesday 15 Thursday 16 Friday 17 9h 10h Registration Welcome Eric Coissac In silico selection and design of barcodes for DNA metabarcoding François Pompanon Diet analysis using NGS Antony Chariton Can metabaroding be used to routinely monitor and assess estuarine environments Antony Chariton Environmental monitoring of marine and estuarine sedimentary environments wins losses and considerations 10h 11h François Pompanon Introduction to DNA metabarcoding Xin Zhou Using standard barcode for DNA metabarcoding Chris Bowler The Tara Ocean Expedition Lucie Zinger DNA metabarcoding in community ecology Xin Zhou A PCR free approach of DNA metabarcoding 11h00 11h30 Coffee break Coffee break Coffee break Coffee break Coffee break 11h30 11h45 Mieke Jansen DNA metabarcoding in biodiversity research James Seymour Haile What s In the Mix Piles of Pills and Bags of Bones Jon Kristoffersen Comparison of conventional otolith analysis and DNA metabarcoding approach to assess the diet of the Mediterranean Shag from pellets Kathleen Stoof Leichsenring Obtaining genetic diatom diversity from arctic lake sediments Jakub Kreisinger Gastrointestinal microbiota of wild and inbred individuals in two House Mouse subspecies assessed using high throughput parallel pyrosequencing 11h45 12h00 Raphael Civade From sampling methodology to Metabarcoding a new way to use environmental DNA eDNA as a tool for fish biodiversity assessment in stream waters Rodolphe Rougerie High throughput species identification of insects as ecological indicators using next generation sequencing Christelle Tougard Molecular identification of the diet for the Pomatoschistus gobies from Mediterranean lagoons towards a better management of the lagoonal ecosystems María Magdalena Fernández Guardiola Attempting to characterize marine meiofauna using metabarcoding what we got and what we wish Vania Patrone Assessing the diversity and dynamics of microbial communities within the gut 12h00 12h15 Kees van Bochove Protocol optimization for eDNA metabarcoding of macrofauna indicator species listed in the European Water Kurt Jordaens The use of DNA metabarcoding to optimize the natural history collections of two Belgian federal institutes Anna Papadopoulou DNA based biodiversity assessment of beetle assemblages making the transition towards a metabarcoding approach Cristina Pavloudi Next generation biodiversity Combination of molecular and morphological approaches to estimate biodiversity in lagoonal sediments Heidy Schimann Host preference of fungal communities in a tropical forest evidences obtained with 454 pyrosequencing of fungal ITS 12h15 12h30 Jos Kielgast eDNA monitoring of aquatic animals based on water samples Moneeb A Qablan Application of NGS to examine genetic diversity of piroplasmids in their definitive host Tomasz Suchan Metabarcoding of plant pollinator networks Cuong Q Tang The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna Lucie Miché Impact of metal and spray pollutions on the biodiversity of Astragalus tragacantha associated root symbionts 12h30 12h45 Alexandros Triantafyllidis Barcoding and Meta barcoding Research in the Laboratory of Animal Population

    Original URL path: http://metabarcoding.org/spip.php?article38 (2016-04-26)
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  • Day 2 : Primer design - metabarcoding.org
    Tweet me Day 2 Primer design BOYER Frédéric Eric Coissac The second practical propose to design primers amplifying a metabarcode marker specific of vascular plant Attached documents PDF design of markers PDF 4 1 Mb Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the week experienced metabarcoders gave lectures on their trials and tribulations

    Original URL path: http://metabarcoding.org/spip.php?article63 (2016-04-26)
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  • Metabarcoding spring school in French Alps (5-9 March 2012) - metabarcoding.org
    allows to establish a list of taxa present in the sample Depending of the sample e g soil water permafrost feces DNA metabarcoding can be applied to many ecological studies such as plant community analysis past ecosystem reconstruction or diet assessment We propose a spring school including lectures and practical sessions on metabarcoding This school is open for twenty participants student or researcher Main lecturers Christian Brochmann Eric Coissac François Pompanon PIerre Taberlet Eske Willerslev Lucie Zinger Previsional program Monday 5 Tuesday 6 Wednesday 7 Thursday 8 Friday 9 9h 10h Welcome Eric Coissac Designing new metabarcodes François Pompanon Diet analysis Pierre Taberlet Biodiversity estimation from soil analysis Lecture 10h 11h Pierre Taberlet Introduction to DNA metabarcoding Christian Brockmann Construction of curated taxonomic reference libraries Lucie Zinger Bacterial and Fungal biodiversity estimation Eric Coissac From sequences to biodiversity Lecture 11h00 11h30 Coffee break Coffee break Coffee break Coffee break Coffee break 11h30 12h 30 Four participant presentations Four participant presentations Four participant presentations Four participant presentations Four participant presentations 12h30 14h30 Lunch Lunch Lunch Lunch Lunch 14h30 17h30 Practical session Group A Soil sampling Group B Marker design Practical session Group A Marker design Group B Soil sampling Practical session Group A DNA extraction Group B Data analysis Practical session Group A Data analysis Group B DNA extraction Skiing afternoon Application The number of participants will be limited to 20 Applications including a short CV and a short motivation letter should be sent to spring2012 at metabarcoding org with subject ECOCHANGE DNA Metabarcoding School 2012 no later than DECEMBER 15th 2011 Accomodation All lectures and practicals will be in a small village Pinsot near Grenoble You will stay in an hotel Le pic de la belle étoile with all facilities restaurant swimming pool Lectures will take place in the same

    Original URL path: http://metabarcoding.org/spip.php?article3 (2016-04-26)
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  • Metabarcoding spring school in French Alps - metabarcoding.org
    Coffee break Coffee break Coffee break Coffee break 11h30 11h 45 Jonas Astrin DNA barcoding at the Museum Koenig Iliana Aglaia Bista Enhancing freshwater ecosystem biomonitoring Defining and testing a next generation sequencing biodiversity identification framework Kristine Bohmann From Swaziland to the UK next generation sequencing on bat faeces Séverine Drouhot Trophic transfer bioaccumulation and effects of contaminants in terrestrial food webs 11h45 12h 00 Sandra Baksay Cat hair silent witness of crime scene Mihaela Ion Standard and molecular methods used toward a better understanding of centipedes Panagiotis Kasapidis Diet analysis of the Mediterranean shag Phalacrocorax aristotelis desmarestii using conventional techniques and next generation sequencing Sarah Leake Human Identification through Analysis of the Salivary Microbiome 12h00 12h 15 Mailyn Gonzalez Inventorying tropical rich ecosystems with DNA barcoding Jakub Mrazek Phylogeny of anaerobic gut fungi Megan Paustian Exploring the Role of Land snails in Ecosystems Miroslaw Ratkiewicz Habitat use and food preferences of a large herbivore the moose Alces alces in Poland revealed by radio tracking and molecular diet analysis 12h15 12h 30 Eeva Soininen Variability of vole food preferences new insights using DNA metabarcoding Tamara Těšitelová Is orchid distribution limited by their mycorrhizal associations Cameron Turner Investigating fish abundance through quantification of aqueous environmental DNA Manuel Ruedi Cryptic lineages or cryptic species in european barcoded bats Chiroptera 12h30 12h 45 Martha Kaddumukasa Identification of mosquito blood meals using cytochrome c oxidase and cytochrome b PCR Violette Marchais Benthic vs pelagic contribution in the diet of marine benthic primary consumers a multi tool approach Magdalena Guardiola Molecular and morphological approaches to biodiversity assessment of soft bottom assemblages Catharine Bruce No title yet 12h45 14h30 Lunch Lunch Lunch Lunch Lunch 14h30 17h30 Practical session Group A Soil sampling Group B Marker design Practical session Group A Marker design Group B Soil sampling

    Original URL path: http://metabarcoding.org/spip.php?article8 (2016-04-26)
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  • Day 3 : Data analysis I - metabarcoding.org
    data to a list of species BOYER Frédéric Eric Coissac This third practical introduce OBITools and the way to use them for processing raw sequencing data to obtain a list of taxa You can browse OBITools doc Attached documents sequence day3 pdf PDF 3 6 Mb Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During

    Original URL path: http://metabarcoding.org/spip.php?article64 (2016-04-26)
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  • Day 1 : UNIX introduction - metabarcoding.org
    BOYER Frédéric Eric Coissac The first session of the practicals is dedicated to UNIX system presentation The basic skills of the unix file system and process management are presented to allow participants to Easley follow following session on DNA metabarcoding bioinformatics Attached documents PDF Unix introduction PDF 1 8 Mb Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills

    Original URL path: http://metabarcoding.org/spip.php?article62 (2016-04-26)
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  • Eric Coissac - metabarcoding.org
    email address Required Subject Required Text of your message Required Please leave this field empty Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the week experienced metabarcoders gave lectures on their trials and tribulations in the field of metabarcoding sparking conversations between the attendees The end of the first day saw flash talks from

    Original URL path: http://metabarcoding.org/spip.php?auteur1&debut_articles=10 (2016-04-26)
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