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  • metabarcoding.org
    of environmental DNA eDNA To be considered for this position please send your CV and brief email text explaining your suitability to Read more of Developing metabarcoding tools for environmental DNA based biomonitoring in aquatic ecosystems Latest articles Developing metabarcoding tools for environmental DNA based biomonitoring in aquatic ecosystems 17 April by Cathryn Abbott A 2 year NSERC Visiting Fellow Post Doctoral position is available at the Pacific Biological Read more of Developing metabarcoding tools for environmental DNA based biomonitoring in aquatic ecosystems The sixth DNA metabarcoding Spring School at Kunming 2 March by Eric Coissac YU Douglas ZHOU Xin DNA metabarcoding is a rapidly evolving method for assessing biodiversity from environmental Read more of The sixth DNA metabarcoding Spring School at Kunming ECOGEN Ecosystem change and species persistence over time a genome based approach 9 February by ALSOS Inger Main goal Develop high taxonomic resolution ancient environmental DNA methods in order to Read more of ECOGEN Ecosystem change and species persistence over time a genome based approach Some pictures from the Two days with DNA metabarcoding Cluj 20 May 2015 by Eric Coissac We have now reach the end of the Two days with DNA metabarcoding Cluj For your best Read more of Some pictures from the Two days with DNA metabarcoding Cluj The fifth DNA metabarcoding Spring School at Białowieża 3 March 2015 by Eric Coissac Jan M WOJCIK Rafal KOWALCZYK TABERLET Pierre DNA metabarcoding is a rapidly evolving method for assessing biodiversity from environmental Read more of The fifth DNA metabarcoding Spring School at Białowieża 0 5 10 15 20 25 30 35 40 65 Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University

    Original URL path: http://www.metabarcoding.org/ (2016-04-26)
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  • The sixth DNA metabarcoding Spring School at Kunming - metabarcoding.org
    For applicants wishing to participate in the practical sessions we request a more complete letter indicating how your research will benefit from DNA metabarcoding and what you are hoping to learn from this school As part of the course each participant in the practical portion will give a flash talk 5 minutes about your research and how it is related to DNA metabarcoding Registration deadline is 15 May 2016 Main lecturers Xin Zhou BGI China Douglas Yu KIZ China University of East Anglia UK Frédéric Boyer LECA CNRS France Antony Chariton CSIRO Australia Eric Coissac LECA UGA France Pierre Taberlet LECA CNRS France Lucie Zinger EDB CNRS France Kristine Bohmann Geogenetic center Danemark Course Schedule The lectures will cover different aspects of DNA metabarcoding The bioinformatics practicals will introduce data analysis from raw sequences to basic ecological conclusions The molecular ecology practical will present basic techniques for DNA extraction in the field and DNA amplification by PCR After the course formally ends on 26 August many of the lecturers will remain in Kunming to allow for one on one interaction and consultation Travel and accommodation Flights to Kunming To get to Kunming KMG the best way is to fly If travelling from Europe there is a direct flight from Paris CDG to KMG on China Eastern Airlines MU Arrival should be by Sunday 21 August Another good flight from Europe is the KLM AMS CTU flight KL891 and KL892 then flying by China Eastern from CTU to Kunming MU Please feel free to consult with us over the best flight China requires an entry visa arranged before travel Chinese visa details link The visa type is F and you need an invitation letter from KIZ We will provide this upon email request Please give us your this information to include

    Original URL path: http://www.metabarcoding.org/spip.php?article76 (2016-04-26)
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  • Position opportunities - metabarcoding.org
    to DNA metabarcoding or DNA barcoding is welcome to send an email to jobs at metabarcoding org This email must contain a short description of the job a contact email and a short description on how to apply to this position Do not forget to provide to us the dead line date for applying All the best The metabarcoding org team Articles in this section Developing metabarcoding tools for environmental DNA based biomonitoring in aquatic ecosystems 17 April by Cathryn Abbott A 2 year NSERC Visiting Fellow Post Doctoral position is available at the Pacific Biological Read more of Developing metabarcoding tools for environmental DNA based biomonitoring in aquatic ecosystems ECOGEN Ecosystem change and species persistence over time a genome based approach 9 February by ALSOS Inger Main goal Develop high taxonomic resolution ancient environmental DNA methods in order to Read more of ECOGEN Ecosystem change and species persistence over time a genome based approach Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to

    Original URL path: http://www.metabarcoding.org/spip.php?rubrique23 (2016-04-26)
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  • Developing metabarcoding tools for environmental DNA-based biomonitoring in aquatic ecosystems - metabarcoding.org
    role in a multi disciplinary project on validating the use of environmental DNA eDNA based metabarcoding targeting meoifauna for benthic impact assessments of salmon farms in coastal British Columbia Salmon aquaculture causes organic enrichment of surrounding sediments which affects biodiversity and biomass of benthic fauna concomitant with sediment chemical changes Existing environmental impact assessments rely on manual morpho taxonomy or abiotic proxies of organic loading with uncertain accuracy The project aims to develop an efficient and reliable lower cost alternative based on cataloging the diversity and abundance of benthic communities through metabarcoding of environmental DNA eDNA The successful candidate will also play a key collaborative role within two other projects aimed at developing metabarcoding based eDNA biosurveillance of aquatic invasive species AIS Aquatic invasive species AIS pose a major threat to freshwater aquatic ecosystems and fisheries in BC detecting new invasions early and accurately assessing existing AIS distributions are important to maximize the chance for effective management intervention The successful candidate will have a PhD in ecological and or evolutionary genomics or another relevant area and will demonstrate well developed bioinformatics and computational skills including programming e g Perl R Unix Python as applied to the analysis of next generation sequencing data Experience in the preparation of samples for NGS Illumina and knowledge of barcoding metabarcoding and or environmental DNA sampling in aquatic systems would be an asset but not a requirement Candidates should demonstrate a strong track record of publication and be willing to work as part of a collaborative team A 2 year Postdoctoral Fellowship position starting by January 2017 is available with stipend funding at NSERC Visiting Fellowship rates Applications from international candidates will be accepted For more information and to review eligibility criteria see http www nserc crsng gc ca Students Etudiants PD NP Laboratories Laboratoires

    Original URL path: http://www.metabarcoding.org/spip.php?article78 (2016-04-26)
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  • ECOGEN - Ecosystem change and species persistence over time: a genome-based approach - metabarcoding.org
    causing extinction 6 Provide methods and knowledge to inform species conservation and ecosystem management Project tasks We are seeking a research fellow that will join a cross disciplinary team ecology palaeoecology genetics archaeology geology niche modelling working in two geographical regions Norway and the Alps We will expand our knowledge on past vascular plant and animal diversity and abundance at a taxonomic depth that has not been possible until now due to methodological limitations We expect to disentangle the effects of past human land use hunting husbandry burning agriculture climate change and biota on species and ecosystem changes and thereby be able to answer questions central to our understanding of our biological resources such as the level of persistence of species and resilience of ecosystems to environmental drivers the extinction risk of species and the capacity of mountain landscape to buffer against these changes By identifying drivers of shifts in ecosystem services through time we may inform future management The successful candidate will work on development of improved technology The most recent applications of ancient plant DNA analyses are largely developed by our team Taberlet et al 2007 Sønstebø et al 2010 Yoccoz et al 2012 Willerslev et al 2014 For vascular plants the 50 100 base pair long P6 loop region of the chloroplast trnL UAA intron is used in a PCR based method Taberlet et al 2007 which allows identification of all plant families most genera 75 and one third of the species Sønstebø et al 2010 When applied to modern lake sediments half of the species present within 2 m of lakes were detected Alsos et al In prep Our recent study of an 8500 year old core from Svalbard show that the method detect all except two genera identified in a macrofossil study from the same lake Alsos et al 2015 Overall 1 2 times more taxa of vascular plants were identified with ancient DNA than macrofossils and the number of taxa identified per sample was 2 7 times higher for the former Thus DNA analyses of Holocene lake sediment can reveal the presence of rare taxa and thereby allow for a better estimation of species persistence Further the method is now resource efficient and repeatable and it can be extended to any group of organisms given that a DNA reference library and adequate primers are developed It also allows for semi quantitative interpretations based on the number of PCR repeats where taxa are identified Pansu et al 2015 We will do minor optimization of these applications and analyse all samples for vascular plants and key herbivores Contact Prof Inger Greve Alsos Tromsø University Museum NO 9037 Tromsø Norway Email inger g alsos at uit no Attached documents msca fellowship alsos pdf PDF 208 kb Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France

    Original URL path: http://www.metabarcoding.org/spip.php?article75 (2016-04-26)
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  • Events - metabarcoding.org
    1 Metabarcoding spring school in French Alps 5 9 March 2012 Official Documents Presentations 2 Metabarcoding spring school in Crete 13 17 May 2013 Practicals Presentations 6 The sixth DNA metabarcoding Spring School at Kunming Articles in this section Molecular Ecology special issue on Environmental DNA 15 May 2012 by TABERLET Pierre This special issue on environmental DNA was edited by Pierre Taberlet Eric Coissac Mehrdad Read more of Molecular Ecology special issue on Environmental DNA Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists

    Original URL path: http://www.metabarcoding.org/spip.php?rubrique1 (2016-04-26)
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  • 6 The sixth DNA metabarcoding Spring School at Kunming - metabarcoding.org
    Latest update 2 March Articles in this section The sixth DNA metabarcoding Spring School at Kunming 2 March by Eric Coissac YU Douglas ZHOU Xin DNA metabarcoding is a rapidly evolving method for assessing biodiversity from environmental Read more of The sixth DNA metabarcoding Spring School at Kunming Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and

    Original URL path: http://www.metabarcoding.org/spip.php?rubrique24 (2016-04-26)
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  • Two days with DNA metabarcoding @ Cluj — Romania - metabarcoding.org
    We have now reach the end of the Two days with DNA metabarcoding Cluj For your best Read more of Some pictures from the Two days with DNA metabarcoding Cluj Two days with DNA metabarcoding Cluj Romania 21 January 2015 by Eric Coissac PUSCAS Mihai TABERLET Pierre DNA metabarcoding is a rapidly evolving method for assessing biodiversity from environmental Read more of Two days with DNA metabarcoding Cluj Romania Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in

    Original URL path: http://www.metabarcoding.org/spip.php?rubrique22 (2016-04-26)
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