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  • metabarcoding.org
    bg br brezhoneg bs bosanski ca català co corsu cpf Kréol réyoné cpf hat Kréyòl Péyi Dayiti cs čeština da dansk de Deutsch en English eo Esperanto es Español eu euskara fa fon fongbè fr français fr fem français féminin gl galego he hr hrvatski hu magyar id Indonesia it italiano it fem italiana ja km lb Lëtzebuergesch my Burmese nl Nederlands oc auv òc auvernhat oc gsc òc gascon oc lms òc lemosin oc lnc òc lengadocian oc ni òc niçard oc ni la òc niçard larg oc ni mis òc nissart mistralenc oc prv òc provençau oc va òc vivaroaupenc pl polski pt Português pt br Português do Brasil ro român ru sk slovenčina sv svenska tr Türkçe vi Ti ng Vi t zh Personal identifiers Login or e mail address Password password forgotten Remember my ID for a few days Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the week experienced

    Original URL path: http://www.metabarcoding.org/spip.php?page=login&url=spip.php%3Fauteur110 (2016-04-26)
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  • The third DNA metabarcoding spring school in Tromsø - metabarcoding.org
    to all researchers involved in DNA metabarcoding projects wishing to present their results The results can be presented as short oral communications of 15 minutes and or as a poster People wishing to present their results must submit a title and short abstract 250 words with their workshop registration and indicate their preference for oral presentation or poster Provisional planning TIme Sunday Monday Tuesday Wednesday Thursday Friday Saturday March 30 th March 31 st April 1 st April 2 nd April 3 rd April 4 th April 5 th 7h30 8h30 Breakfast 8h30 9h00 Welcome lecture Sampling design Nigel Yoccoz Biodiversity Patterns Lucie Zinger Environemental monitoring Anthony Chariton 9h00 10h00 DNA metabarcoding introduction Pierre Taberlet Keynote 1 Douglas Yu Keynote 3 Xin Zhou 10h00 10h30 Primer design Eric Coissac eDNA from sampling to molecular lab Pierre Taberlet Diet analysis Marta de Barba Microbiology DNA metabarcoding Håvard Kauserud Coffee break 10h30 11h30 6 x 15 5 min participant talks 6 x 15 5 min participant talks 11h30 12h00 Lunch 12h00 13h00 Lunch Poster 13h00 14h00 Practical 1 Practical 2 Practical 3 Practical 4 14h00 15h00 Keynote 2 Keynote 4 Anthony Chariton 15h00 15h30 Coffee break 15h30 16h00 Diner 6 x 15 5 min participant talks 5 x 15 5 min participant talks 16h00 17h00 17h00 17h30 Closure 17h30 19h30 Travel to Skibotn Field station 8 x 12 3 min participant talks 8 x 12 3 min participant talks 8 x 12 3 min participant talks Travel to Tromsø Keynote talks Keynote 1 Douglas Yu University of East Anglia UK Kunming Institute of Zoology China Reliable verifiable and efficient monitoring of biodiversity via metabarcoding Keynote 2 Pierre Taberlet LECA France DNA metabarcoding and palaeoenvironments Keynote 3 Xin Zhou BGI China Moving from COI metabarcoding to mitochondrial metabarcoding Keynote 4 Anthony Chariton CSIRO Australia Saltwater inundation in Kakadu Nation Park can ecogenomics assist in the management of sea level rise Travel and accomodation ForBio will cover travel stay at the Skibotn Field Station including 3 meals of typical Norwegian food per day and a late evening snack and accommodation at Sydspissen Hotel in Tromsø for 4 days 1 day before and after the school dates plus 2 days during the workshop for ForBio members ForBio may also support masters students registered at Danish Swedish Norwegian or Finnish universities who fulfill the prerequisites and need the course for their thesis work ForBio will not cover any expenses e g food travel or accommodation costs for other participants who have to be registered as ForBio associates to attend the course and or workshop See http www forbio uio no for more information on ForBio membership For ForBio associates the total cost of stay at the Skibotn Field Station for 4 days is estimated at 2116 NOK 256 including room and food Reimbursement ForBio members and invited participants do not need to reserve or pay for accommodation at the Sydspissen hotel ForBio will reserve rooms for them and pay the bill directly All participants except invited

    Original URL path: http://www.metabarcoding.org/spip.php?article66 (2016-04-26)
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  • Day 3 : Data analysis I - metabarcoding.org
    data to a list of species BOYER Frédéric Eric Coissac This third practical introduce OBITools and the way to use them for processing raw sequencing data to obtain a list of taxa You can browse OBITools doc Attached documents sequence day3 pdf PDF 3 6 Mb Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During

    Original URL path: http://www.metabarcoding.org/spip.php?article64 (2016-04-26)
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  • Day 1 : UNIX introduction - metabarcoding.org
    BOYER Frédéric Eric Coissac The first session of the practicals is dedicated to UNIX system presentation The basic skills of the unix file system and process management are presented to allow participants to Easley follow following session on DNA metabarcoding bioinformatics Attached documents PDF Unix introduction PDF 1 8 Mb Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills

    Original URL path: http://www.metabarcoding.org/spip.php?article62 (2016-04-26)
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  • Designing new metabarcodes - metabarcoding.org
    constraints oblige most of the time to compare several sets of primers and eventually to design new primers dedicated to a specific study I will discuss during this presentation about bioinformatics approaches allowing an objective estimation of the relative qualities of several PCR primer pairs Based on these method it is possible to develop software selecting new primer pairs by maximizing these criteria in the context of a set of experimental constraints defined by the biologist Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the week experienced metabarcoders gave lectures on their trials and tribulations in the field of metabarcoding sparking conversations between the attendees The end of the first day saw flash talks from all participants of the event creating an icebreaker and showing the wide variety of applications for metabarcoding including dietary studies environmental health fundamental ecology and exploration of rare and ancient habitats Pierre Taberlet who is rumoured to run 8000

    Original URL path: http://www.metabarcoding.org/spip.php?article27 (2016-04-26)
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  • Metabarcoding spring school in French Alps (5-9 March 2012) - metabarcoding.org
    allows to establish a list of taxa present in the sample Depending of the sample e g soil water permafrost feces DNA metabarcoding can be applied to many ecological studies such as plant community analysis past ecosystem reconstruction or diet assessment We propose a spring school including lectures and practical sessions on metabarcoding This school is open for twenty participants student or researcher Main lecturers Christian Brochmann Eric Coissac François Pompanon PIerre Taberlet Eske Willerslev Lucie Zinger Previsional program Monday 5 Tuesday 6 Wednesday 7 Thursday 8 Friday 9 9h 10h Welcome Eric Coissac Designing new metabarcodes François Pompanon Diet analysis Pierre Taberlet Biodiversity estimation from soil analysis Lecture 10h 11h Pierre Taberlet Introduction to DNA metabarcoding Christian Brockmann Construction of curated taxonomic reference libraries Lucie Zinger Bacterial and Fungal biodiversity estimation Eric Coissac From sequences to biodiversity Lecture 11h00 11h30 Coffee break Coffee break Coffee break Coffee break Coffee break 11h30 12h 30 Four participant presentations Four participant presentations Four participant presentations Four participant presentations Four participant presentations 12h30 14h30 Lunch Lunch Lunch Lunch Lunch 14h30 17h30 Practical session Group A Soil sampling Group B Marker design Practical session Group A Marker design Group B Soil sampling Practical session Group A DNA extraction Group B Data analysis Practical session Group A Data analysis Group B DNA extraction Skiing afternoon Application The number of participants will be limited to 20 Applications including a short CV and a short motivation letter should be sent to spring2012 at metabarcoding org with subject ECOCHANGE DNA Metabarcoding School 2012 no later than DECEMBER 15th 2011 Accomodation All lectures and practicals will be in a small village Pinsot near Grenoble You will stay in an hotel Le pic de la belle étoile with all facilities restaurant swimming pool Lectures will take place in the same

    Original URL path: http://www.metabarcoding.org/spip.php?article3 (2016-04-26)
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  • Metabarcoding spring school in French Alps - metabarcoding.org
    Coffee break Coffee break Coffee break Coffee break 11h30 11h 45 Jonas Astrin DNA barcoding at the Museum Koenig Iliana Aglaia Bista Enhancing freshwater ecosystem biomonitoring Defining and testing a next generation sequencing biodiversity identification framework Kristine Bohmann From Swaziland to the UK next generation sequencing on bat faeces Séverine Drouhot Trophic transfer bioaccumulation and effects of contaminants in terrestrial food webs 11h45 12h 00 Sandra Baksay Cat hair silent witness of crime scene Mihaela Ion Standard and molecular methods used toward a better understanding of centipedes Panagiotis Kasapidis Diet analysis of the Mediterranean shag Phalacrocorax aristotelis desmarestii using conventional techniques and next generation sequencing Sarah Leake Human Identification through Analysis of the Salivary Microbiome 12h00 12h 15 Mailyn Gonzalez Inventorying tropical rich ecosystems with DNA barcoding Jakub Mrazek Phylogeny of anaerobic gut fungi Megan Paustian Exploring the Role of Land snails in Ecosystems Miroslaw Ratkiewicz Habitat use and food preferences of a large herbivore the moose Alces alces in Poland revealed by radio tracking and molecular diet analysis 12h15 12h 30 Eeva Soininen Variability of vole food preferences new insights using DNA metabarcoding Tamara Těšitelová Is orchid distribution limited by their mycorrhizal associations Cameron Turner Investigating fish abundance through quantification of aqueous environmental DNA Manuel Ruedi Cryptic lineages or cryptic species in european barcoded bats Chiroptera 12h30 12h 45 Martha Kaddumukasa Identification of mosquito blood meals using cytochrome c oxidase and cytochrome b PCR Violette Marchais Benthic vs pelagic contribution in the diet of marine benthic primary consumers a multi tool approach Magdalena Guardiola Molecular and morphological approaches to biodiversity assessment of soft bottom assemblages Catharine Bruce No title yet 12h45 14h30 Lunch Lunch Lunch Lunch Lunch 14h30 17h30 Practical session Group A Soil sampling Group B Marker design Practical session Group A Marker design Group B Soil sampling

    Original URL path: http://www.metabarcoding.org/spip.php?article8 (2016-04-26)
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  • Eric Coissac - metabarcoding.org
    email address Required Subject Required Text of your message Required Please leave this field empty Twitter Metabarcoding Editorial board BRANDNER Melissa University of Nordland Bodø Norway BROCHMANN Christian National Centre for Biosystematics Oslo Norway CHARITON Anthony CSIRO Land and Water Lucas Heights NA Australia DEAGLE Bruce University of Victoria Victoria Canada Eric Coissac LECA Grenoble France KASAPIDIS Panagiotis Hellenic Center for Marine Research Irakleion Crete Greece PAWLOWSKI Jan Université de Genève Genève 4 Switzerland TABERLET Pierre LECA Grenoble France WILLERSLEV Eske Centre for GeoGenetics Copenhagen Denmark Editorial Vodka Bison and Metabarcoding 31 July 2015 by BRANDNER Melissa The start of last month saw the occurrence of the Fifth Metabarcoding Spring School held in Białowieża National Park Poland A variety of scientists attended from all over the globe to learn share and inspire with unique stories of metabarcoding The scientists at the Mammal Research Institute PAS in Białowieża National Park hosted this year s workshop And our hats go off to them for the organizational skills warmth and hospitality During the week experienced metabarcoders gave lectures on their trials and tribulations in the field of metabarcoding sparking conversations between the attendees The end of the first day saw flash talks from

    Original URL path: http://www.metabarcoding.org/spip.php?auteur1&debut_articles=10 (2016-04-26)
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