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  • Blast Database Options
    Sequences AA Williams 82 Genome Sequencing Project Nucleic Acid Sequences Click to BLAST against Williams 82 Assembly 2 Genomic Sequence Wm82 a2 Nucleic acid sequences of the masked Wm82 a2 v1 pseudomolecules chromosomes Download Data Set Click to BLAST against Williams 82 Assembly 2 Annotation 1 Wm82 a2 v1 Transcript Sequences Nucleic acid sequences of all Wm82 a2 v1 transcript sequences Download Data Set Click to BLAST against Williams 82 Assembly 2 Annotation 1 Wm82 a2 v1 Coding Sequences Nucleic acid sequences of all Wm82 a2 v1 coding sequences Download Data Set Click to BLAST against Williams 82 Assembly 1 Genomic Sequence Wm82 a1 Nucleic acid sequences of all Wm82 a1 v1 pseudomolecules chromosomes Download Data Set Click to BLAST against Williams 82 Assembly 1 Annotation 1 1 Wm82 a1 v1 1 Coding Sequences Nucleic acid sequences of all Wm82 a1 v1 1 coding sequences Download Data Set Click to BLAST against Williams 82 Assembly 1 Annotation 1 1 Wm82 a1 v1 1 Transcript Sequences Nucleic acid sequences of all Wm82 a1 v1 1 transcript sequences Download Data Set Williams 82 Genome Sequencing Project Protein Sequences Click to BLAST against Williams 82 Assembly 2 Annotation 1 Wm82 a2 v1 Protein Sequences Protein sequence of all coding sequences in the Wm82 a2 v1 annotation set Download Data Set Click to BLAST against Williams 82 Assembly 1 Annotation 1 1 Wm82 a1 v1 1 Protein Sequences Protein sequence of all coding sequences int the Wm82 a1 v1 1 annotation set Download Data Set GenBank Nucleic Acid Sequences June 2015 Click to BLAST against All G max GenBank Sequences NA Nucleic acid sequence of all Glycine max Nucleotide NucCore Genomic Survey Sequences GSS and EST sequences Click to BLAST against All Non EST G max GenBank NA Sequences NA Nucleic acid sequence of all G max Nucleotide NucCore and Genomic Survey Sequences GSS Download Data Set Click to BLAST against G max GenBank EST Sequences NA Nucleic acid sequence of G max ESTs Download Data Set Click to BLAST against G max GenBank Core Sequences NA Nucleic acid sequence of G max Nucleotide NucCore sequences Download Data Set Click to BLAST against G max GenBank GSS Sequences NA Nucleic acid sequence of G max Genomic Survey Sequences GSS Download Data Set Click to BLAST against All G soja GenBank Sequences NA Nucleic acid sequence of all Glycine soja Nucleotide NucCore Genomic Survey Sequences GSS and EST sequences Click to BLAST against All Non EST G soja GenBank NA Sequences NA Nucleic acid sequence of G soja Nucleotide NucCore and Genomic Survey Sequences GSS Download Data Set Click to BLAST against G soja GenBank Core Sequences NA Nucleic acid sequence of G soja Nucleotide NucCore sequences Download Data Set Click to BLAST against G soja GenBank EST Sequences NA Nucleic acid sequence of G soja ESTs Download Data Set Click to BLAST against G soja GenBank GSS Sequences NA Nucleic acid sequence of G soja Genomic Survey Sequences GSS Download Data Set GenBank Protein

    Original URL path: http://soybase.org/GlycineBlastPages/blast_descriptions.php (2016-04-30)
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  • Sequence Feature Scan
    of names and sequence coordinates for gene models or markers in a chromosomal region This tool will generate a downloadable text file of names and sequence coordinates for gene models Glymas or markers located in a user defined chromosomal region Markers can be retrieved for either the Wm82 a1 or Wm82 a2 genome assemblies Gene models are available for the Wm82 a1 v1 Wm82 a1 v1 1 or Wm82 a2

    Original URL path: http://soybase.org/dlpages/SeqScan/SeqScanInput.php (2016-04-30)
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  • GO 0016757 transferase activity transferring glycosyl groups Glyma 05g194700 AT AT4G33480 1 Glyma 06g004900 AT AT2G16630 1 Pollen Ole e 1 allergen and extensin family protein Glyma 20g250200 AT AT5G48380 1 BAK1 interacting receptor like kinase 1 Glyma 01g179400 GO GO 0055114 oxidation reduction process Glyma 19g245400 GO GO 0008061 chitin binding Glyma 08g239400 KOG KOG2886 Uncharacterized conserved protein Glyma 05g224000 Panther PTHR22594 ASPARTYL LYSYL TRNA SYNTHETASE Glyma 10g179900 PFAM

    Original URL path: http://soybase.org/dlpages/exampleviewer.php (2016-04-30)
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  • Gene Model Flanking Sequence Download Page
    NoScript add www soybase org to the exclude filter Gene Model Flanking Sequence Download Page Instructions Select Assembly Version Assembly 2 0 Assembly 1 01 Paste the gene list into the field or choose a file of names for upload The list should have one gene name per line Paste Feature List 0 document getElementById userfilename disabled true else document getElementById userfilename disabled false cols 20 rows 10 Load Examples

    Original URL path: http://soybase.org/dlpages/flank/index.php (2016-04-30)
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  • Gene Model 3' and 5' UTR Sequences Download Page
    soybase org to the exclude filter Gene Model 3 and 5 UTR Sequences Download Page This tool accepts a list of Wm82 gene model names eg Wm82 a1 v1 1 Glyma01g36670 or Wm82 a2 v1 Glyma 15g026400 and returns the sequences of the 5 and 3 UTRs of all mRNAs for that gene Instructions Paste the list of gene model names into the field or choose a file of names

    Original URL path: http://soybase.org/dlpages/flank/utrindex.php (2016-04-30)
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  • SoySNP50K haplotype download - SoyBase.org
    select cultivars of interest from the complete list of cultivars haplotyped by Song et al Readme Text Included in download Including this READ ME there are three files returned for a cultivar haplotype search All data are in plain text files with tab delimiters between columns NOTE We have observed that on some computers opening these files directly in Excel results in each line being placed in a single cell rather than 1 cell per tab separated column This can be solved by opening the file in Word or another text editor and using copy paste to put the data into Excel 1 This READ ME file 2 submitted list report Williams 82 aX XXXXXXXXXX csv This file contains a summary of the requested SoySNP50K haplotype data in SoyBase Column 1 is the cultivar names as submitted Column 2 indicates whether a SoySNP50K haplotype is available for that cultivar Found Haplotype data was found using the submitted cultivar name Also searched with Some cultivars are known by several names or variants In these cases we attempt to find the relevant haplotype data using each of them When used the alternate names are shown in column 3 Not found This cultivar

    Original URL path: http://soybase.org/snps/download.php (2016-04-30)
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  • SoyBase.org
    Home Help Tutorials Genetic Map Sequence Map Expression Mutants Projects Tools Community Site Map Full functionality of the SoyBase site requires that JavaScript be enabled Please turn on JavaScript in your browser s preferences If you are using a selective

    Original URL path: http://soybase.org/dlpages/gmapdownload.php (2016-04-30)
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  • Feature Search Results
    Follow us on Twitter SoyBaseDatabase Integrating Genetics and Molecular Biology for Soybean Researchers SoyBase Home Help Tutorials Genetic Map Sequence Map Expression Mutants Projects Tools Community Site Map Gene Call

    Original URL path: http://soybase.org/SeqMapSearch/listSearch2.php (2016-04-30)
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